*MIMt Update: New Markers Available. Markers for ITS, 18S, 23S, and 28S are now available for download in MIMt (curated and full versions)! *
MIMt is a new suite for metagenomics sample identification through the main markers used for each taxonomic group. Thus, MIMt is composed of databases to perform targeted identification for Prokaryotes through 16S rRNA, Eukaryotes through 18S rRNA and Fungi identification through ITS.
All MIMt databases have two variants, one with all available sequences either manually curated or not, and another version only with the sequences that have been manually curated by RefSeq.
The full version contains sequences from Target Loci, sequences extracted from complete sequenced genomes from RefSeq and sequences extracted from sequenced genomes from Genbank.
All our databases are made up of complete sequences of the various markers, since they have not been obtained by targeted sequencing using primers but extracted directly from the whole genome of the species and they are updated regularly including markers for the new species identified.
In addition, every sequence contained in our databases has associated to it the complete taxonomy classification from kingdom to the species level.
Prokaryotic ribosome
Eukaryotic ribosome
MIMt is licensed under the terms of the Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) for all copyrightable material, this means that anyone is free to copy, reuse, display and distribute the images and data, provided you give us credit by citing:
MIMt – A curated 16S rRNA reference database with less redundancy and higher accuracy at species-level identification.
Cabezas MP., Fonseca NA., Muñoz-Merida A. Environmental Microbiome 19, 88 (2024). https://doi.org/10.1186/s40793-024-00634-w